Atlas of the fore- and midbrain of the brown antechinus (Antechinus stuartii)

 

Introduction

The brain of this small dasyurid marsupial (brown antechinus Antechinus stuartii) is of particular scientific interest because of its value as a model of the effects of stress on central nervous system structure and function.  Brown antechinus have a precisely synchronised life history and males have only a single breeding opportunity.  During late winter and early spring, males engage in a short mating period, characterised by highly aggressive territorial behaviour.  This brief mating period is followed by universal male death, or male semelparity (Tyndale-Biscoe, 2005; Naylor et al., 2008), due to failure of glucocorticoid feedback, immune system collapse and overwhelming parasitic infestations.  By contrast, females often live to reproduce a second year (McAllan, 2003, Naylor et al., 2008).  This life cycle has been termed “big bang reproduction” by some authors (Tyndale-Biscoe, 2005).  

 

Materials and Methods

All procedures conformed to the guidelines of the Australian National Health and Medical Research Council and were approved by the University of NSW Animal Care and Ethics Committee.  Brown antechinus were captured live in the Blue Mountains west of Sydney under licence from the NSW National Parks and Wildlife Service.  Animals were deeply anaesthetised with pentobarbitone sodium (60 mg/kg body weight), delivered by intraperitoneal injection, prior to transcardial perfusion with Zamboni’s fixative. The brains were embedded in paraffin, sectioned coronally at a thickness of 14 µm and stained with cresyl violet or processed for immunohistochemistry.   Photomicrographs were taken with an Olympus BX51 Tiling microscope.  Images were processed using Adobe Photoshop CS2 and photomicrographs of some sections were digitally enhanced to maximise contrast.  Photomicrographs were placed in Adobe Illustrator CS2 for labelling.  

 

References

McAllan BM (2003) Timing of reproduction in carnivorous marsupials. In: Predators with pouches: The biology of carnivorous marsupials. Jones M, Dickman C, Archer M eds. Chapter 10, pt 2, pp 147-164. Sydney: CSIRO.

 Naylor R, Richardson SJ, McAllan BM (2008) Boom and bust: a review of the physiology of the marsupial genus AntechinusJournal of Comparative Physiology B 178, 545-62.

Tyndale-Biscoe H (2005) Life of Marsupials. Collingwood: CSIRO.


List of Abbreviations

Name of Structure Abbreviation Name of Structure Abbreviation
oculomotor nerve 3n anterior olfactory region, ventral AOV
oculomotor nucleus 3N amygdalopiriform transition area APir
oculomotor nucleus, parvicellular part 3PC anterior pretectal nucleus, dorsal part APTD
third ventricle 3V anterior pretectal nucleus, ventral part APTV
A11 dopaminergic cells A11 cerebral aqueduct Aq
anterior amygdaloid region AA arcuate hypothalamic nucleus, lateral part ArcL
anterior amygdaloid region, dorsal AAD arcuate hypothalamic nucleus, lateroposterior part ArcLP
anterior amygdaloid region, ventral AAV arcuate hypothalamic nucleus, medial part ArcM
anterior commissure ac arcuate hypothalamic nucleus, medioposterior part ArcMP
anterior commissure, anterior limb aca amygdalostriatal transition zone ASt
nucleus accumbens Acb anterior tegmental nucleus ATg
nucleus accumbens, core AcbC primary auditory cortex Au1
nucleus accumbens, shell AcbSh anterior ventral thalamic nucleus AV
anterior cerebral artery acer B9 serotonin cells B9
anterior commissure, intrabulbar aci brachium of inferior colliculus bic
anterior cortical amygdaloid area ACo nucleus of brachium of inferior colliculus BIC
anterior commissure, posterior limb acp basolateral amygdaloid nucleus, anterior part BLA
anterodorsal thalamic nucleus AD basolateral amygdaloid nucleus, posterior part BLP
anterior hypothalamic area AHA basolateral amygdaloid nucleus, ventral part BLV
amygdalohippocampal transition area AHi basomedial amygdaloid nucleus, anterior part BMA
amygdalohippocampal trans’n area, posteromedial part AHiPM basomedial amygdaloid nucleus, posterior part BMP
agranular insula, dorsal AID brachium of superior colliculus bsc
agranular insula cortex, posterior AIP basal telencephalic commissure btc
agranular insula, ventral AIV cornu Ammonis, area 1 CA1
alveus of hippocampus alv cornu Ammonis, area 2 CA2
anterior medial thalamic nucleus AM cornu Ammonis, area 3 CA3
anterior medial thalamic nucleus, ventral part AMV nucleus of the central acoustic tract CAT
accessory neurosecretory nucleus ANS caudate Cd
anterior olfactory region, dorsal AOD central amygdaloid nuclei Ce
anterior olfactory region, medial AOM central amygdaloid nucleus, capsular part CeC
Name of Structure Abbreviation Name of Structure Abbreviation
central amygdaloid nucleus, lateral division CeL external capsule ec
central amygdaloid nucleus, medial division CeM ectorhinal cortex Ect
cingulate cortex Cg external medullary lamina eml
cingulate cortex area 1 Cg1 entopeduncular nucleus EP
cingulate cortex area 2 Cg2 external plexiform layer of main olfactory bulb EPl
choroid plexus chp Edinger-Westphal nucleus EW
centrolateral thalamic nucleus CL fields of Forel F
claustrum Cl fornix f
caudal linear nucleus CLi fimbriodentate sulcus fds
central medial thalamic nuclues CM fimbria of hippocampus fi
cerebral peduncle cp fasciculus retroflexus fr
commissure of superior colliculus csc frontal association cortex FrA
cortex-amygdala transition area CxA granule cell cluster GCC
dorsal hypothalamic area DA granule cell cluster magna GCCM
deep cortical white matter dcw granular insula cortex GI
dorsal endopiriform nucleus DEn glomerular layer of main olfactory bulb Gl
dentate gyrus DG globus pallidus GP
nucleus of Darkschewitsch Dk granule cell layer of accessory olfactory bulb GrA
dorsal lateral geniculate nucleus, alpha segment DLGa granule cell layer of dentate gyrus GrDG
dorsal lateral geniculate nucleus, beta segment DLGb granule cell layer of main olfactory bulb GrO
dorsolateral periaqueductal grey DLPAG habenular commissure hbc
dorsomedial hypothalamic nucleus, dorsal part DMD hippocampal commissure hc
dorsomedial periaqueductal grey DMPAG nucleus of horizontal limb of diagonal band HDB
deep grey matter of superior colliculus DpG intercalated amygdaloid nucleus I
deep white matter of superior colliculus DpWh interanterodorsal thalamic nucleus IAD
dorsal raphe nucleus DR interanteromedial thalamic nucleus IAM
dorsal subiculum DS internal capsule ic
dorsal terminal nucleus of optic tract DT intergeniculate leaflet IGL
dorsal tuberomammillary nucleus DTM intermediate nucleus of the lateral lemniscus ILL
dorsal transitional cortex DTr intermediodorsal thalamic nucleus IMD
extended amygdala, central part EAC interstitial nucleus of Cajal InC
extended amygdala, medial part EAM
Name of Structure Abbreviation Name of Structure Abbreviation
interstitial nucleus of Cajal, shell part InCSh lateral striatal stripe LSS
intermediate grey of superior colliculus InG lateral septal nucleus, ventral LSV
intermediate white of superior colliculus InWh lateral terminal nucleus of optic tract LT
interstitial nu. of the posterior limb of ant. commissure IPAC lateral ventricle LV
interpeduncular nucleus, dorsolateral part IPDL motor cortex M
interpeduncular nucleus, dorsomedial part IPDM medial accessory oculomotor nucleus MA3
interpeduncular nucleus, lateral part IPL magnocellular nucleus of lateral hypothalamus MCLH
interpeduncular nucleus, ventral part IPV middle cerebellar peduncle mcp
lateral amygdaloid nucleus La magnocellular preoptic area MCPO
lateral anterior hypothalamic nucleus LA mediodorsal thalamic nucleus MD
lateral nucleus accumbens shell LAcbSh mediodorsal thalamic nucleus, central part MDC
lateral amygdaloid nucleus, dorsolateral part LaDL mediodorsal thalamic nucleus, lateral part MDL
lateral amygdaloid nucleus, ventrolateral part LaVL mediodorsal thalamic nucleus, medial part MDM
lateral amygdaloid nucleus, ventromedial part LaVM median eminence ME
lateral entorhinal cortex LEnt mesencephalic trigeminal nucleus Me5
longitudinal fibres of the pons lfp mesencephalic trigeminal tract me5
lateral hypothalamic area LH medial amygdaloid nucleus, anterior part MeA
lateral habenular nucleus LHb median eminence, internal layer MEI
lateral lemniscus ll medial entorhinal cortex MEnt
lateral mammillary nucleus LM medial amygdaloid nucleus, posterodorsal part MePD
lateral olfactory tract lo medial amygdaloid nucleus, posteroventral part MePV
lateral orbital cortex LO medial forebrain bundle mfb
nucleus of lateral olfactory tract, layer 1 LOT1 medial geniculate nucleus, dorsal part MGD
nucleus of lateral olfactory tract, layer 2 LOT2 medial geniculate nucleus, medial part MGM
nucleus of lateral olfactory tract, layer 3 LOT3 medial geniculate nucleus, ventral part MGV
lateral periaqueductal grey LPAG medial habenular nucleus MHb
lateral posterior thalamic nucleus, laterorostral part LPLR mitral cell layer of main olfactory bulb Mi
lateral posterior thalamic nucleus, mediorostral part LPMR microcellular tegmental nucleus MiTg
lateral preoptic area LPO medial lemniscus ml
lateral septal nucleus, dorsal LSD medial mammillary nucleus, lateral part ML
lateral septal nucleus, intermediate LSI medial longitudinal fasciculus mlf
Name of Structure Abbreviation Name of Structure Abbreviation
medial mammillary nucleus, medial part MM paracentral thalamic nucleus PC
median preoptic area MnPO posterior commissure pc
median raphe nucleus MnR nucleus of the posterior commissure PCom
medial orbital cortex MO periventricular nucleus of hypothalamus Pe
molecular layer of dentate gyrus MoDG perifornical part of lateral hypothalamus PeFLH
mammillary peduncle mp parafascicular thalamic nucleus PF
medial preoptic area MPA posterior hypothalamic nucleus PH
medial preoptic area, lateral part MPOL posterior intralaminar thalamic nucleus PIL
medial preoptic area, medial part MPOM piriform (olfactory) cortex, layer 1 Pir1
mesencephalic reticular formation mRt piriform (olfactory) cortex, layer 1a Pir1a
medial septal nucleus MS piriform (olfactory) cortex, layer 1b Pir1b
mammillothalamic tract mt piriform (olfactory) cortex, layer 2 Pir2
medial terminal nucleus of optic tract MT piriform (olfactory) cortex, layer 3 Pir3
medial tuberal nucleus MTu posterolateral cortical amygdaloid area PLCo
medial geniculate nucleus, marginal zone MZMG peduncular part of lateral hypothalamus PLH
nigrostriatal pathway ns plioglial periaqueductal grey PlPAG
navicular nucleus Nv perilemniscal nucleus, ventral part PLV
optic chiasm och posteromedial cortical amygdaloid area PMCo
omega nucleus Om premammillary nucleus, dorsal part PMD
stratum opticum of superior colliculus Op paramedian raphe nucleus PMnR
oval paracentral thalamic nucleus OPC premammillary nucleus, ventral part PMV
olivary pretectal nucleus OPT pontine nuclei Pn
optic tract opt pontine oral reticular nucleus PnO
nucleus of the optic tract OT posterior thalamic nuclear group Po
prosomere 1 periaqueductal grey p1PAG polymorphic layer of dentate gyrus PoDG
prosomere 1 reticular formation p1Rt posteromedian thalamic nucleus PoMn
paraventricular nucleus of hypothalamus Pa posterior thalamic nuclear group, triangular part PoT
pararubral nucleus PaR peripeduncular nucleus PP
parasubiculum of hippocampal formation PaS posterior pretectal nuclus PPT
parabigeminal nucleus PBG prerubral field PR
parabrachial pigmented nucleus PBP precommissural nucleus PrC
Name of Structure Abbreviation Name of Structure Abbreviation
precuneiform area PrCnF reticular nucleus (prethalamus) Rt
pregeniculate nucleus of prethalamus, magnocellular part PrGMC reticulostrial nucleus RtSt
pregeniculate nucleus of prethalamus, parvicellular part PrGPC reticulotegmental nucleus RtTg
perirhinal cortex PRh subiculum of hippocampal formation S
prelimbic cortex PrL primary somatosensory cortex S1
prelimbic cortex PrL primary somatosensory cortex, forelimb area S1FL
presubiculum of hippocampal formation PrS primary somatosensory cortex, hindlimb area S1HL
parasubthalamic nucleus PSTh primary somatosensory cortex, mystacial (whisker) area S1My
paratenial thalamic nucleus PT secondary somatosensory cortex S2
putamen Pu superior colliculus SC
paraventricular thalamic nucleus, anterior part PVA suprachiasmatic nucleus of hypothalamus SCh
paraventricular thalamic nucleus, posterior part PVP subcommissural organ SCO
pyramidal tract py superior cerebellar peduncle scp
rhabdoid nucleus Rbd septofimbrial nucleus SFi
retrochiasmatic area, lateral part RChL subfornical organ SFO
retrochiasmatic area, medial part RChM suprageniculate thalamic nucleus SG
reuniens thalamic nucleus Re septohippocampal area SHi
retroethmoid nucleus REth septohypothalamic nucleus SHy
rhinal fissure rf substantia innominata, basal part SIB
rhomboid thalamic nucleus Rh stria medullari thalami sm
retroisthmic nucleus RIs substantia nigra, compact part SNC
rostral linear nucleus of midbrain RLi substantia nigra, compact part, dorsal tier SNCD
red nucleus, magnocellular part RMC substantia nigra, compact part, medial tier SNCM
retromammillary nucleus, lateral part RML substantia nigra, lateral part SNL
retromammillary nucleus, medial part RMM substantia nigra, reticular part SNR
red nucleus, parvicellular part RPC supraoptic nucleus of hypothalamus, anterior part SOA
retrorubral fields RRF supraoptic nucleus of hypothalamus, retrochiasmatic part SOR
retrosplenial cortex, dysgranular part RSD supraoptic decussation sox
retrosplenial cortex, granular part RSG subparaventricular nucleus of hypothalamus SPa
retrosplenial cortex, granular part a RSGa subparafascicular nucleus SPF
retrosplenial cortex, granular part b RSGb subparafascicular nucleus, parvicellular part SPFPC
Name of Structure Abbreviation Name of Structure Abbreviation
stria terminalis st ventral endopiriform nucleus VEn
subthalamic nucleus STh ventral lateral thalamic nucleus VL
striohypothalamic area StHy ventrolateral hypothalamic nucleus VLH
bed nucleus of stria terminalis, intraamygdaloidal STIA ventral nucleus of the lateral lemniscus VLL
bed nu. of stria terminalis, lateral division, dorsal part STLD ventrolateral periaqueductal grey VLPAG
bed nu. of stria terminalis, lateral division, juxtacapsular STLJ ventrolateral preoptic nucleus VLPO
bed nu. of stria terminalis, lateral division, ventral part STLV ventral medial thalamic nucleus VM
bed nu. of stria terminalis, medial division, dorsal part STMD ventromedial thalamic nucleus VM
bed nu. of stria terminalis, medial division, posterolateral STMPL ventromedial hypothalamic nucleus, central part VMHC
bed nu. of stria terminalis, medial division, posteromedial STMPM ventromedial hypothalamic nucleus, dorsomedial part VMHDM
bed nu. of stria terminalis, medial division, ventral part STMV ventromedial hypothalamic nucleus, ventrolateral part VMHVL
superior thalamic radiation str ventromedial preoptic nucleus VMPO
supraoculomotor nucleus Su3 ventral marginal zone of hypothalamus VMZ
supraoculomotor cap Su3C ventral orbital cortex VO
subbrachial nucleus SubB ventral pallidum VP
subgeniculate nucleus SubG ventral posterolateral thalamic nucleus VPL
subincertal nucleus SubI ventral posteromedial thalamic nucleus VPM
superficial grey of superior colliculus SuG ventral posterior thalamic nucleus, parvicellular part VPPC
temporal association cortex TeA ventral reuniens thalamic nucleus VRe
tectospinal tract ts ventral subiculum VS
triangular septal nucleus TS xiphoid thalamic nucleus Xi
taenia tecta TT decussation of the superior cerebellar peduncle xscp
olfactory tubercle Tu zona incerta, dorsal part ZID
tuberal region of lateral hypothalamus TuLH zona incerta, ventral part ZIV
nucleus of the trapezoid body Tz stratum zonale of superior colliculus Zo
trapezoid body tz
primary visual cortex V1
secondary visual cortex, lateral region V2L
secondary visual cortex, medial region V2M
ventral anterior thalamic nucleus VA
nucleus of vertical limb of diagonal band VDB
Plate 1: Section 1 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 1: Section 1 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 2: Section 2 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 3: Section 3 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 3: Section 3 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 4: Section 4 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 4: Section 4 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 5: Section 5 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 5: Section 5 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 6: Section 6 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 6: Section 6 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 7: Section 7 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 7: Section 7 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 8: Section 8 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 8: Section 8 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 9: Section 9 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 9: Section 9 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 10: Section 10 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 10: Section 10 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 11: Section 1 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 11: Section 11 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 12: Section 12 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 12: Section 12 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 13: Section 13 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Plate 13: Section 13 of Antechinus brain sectioned coronally at a thickness of 14 µm.

Small versions of Plates 1-13 of Antechinus brain


Index: Names of structures corresponding to Plates of Antechinus atlas

Abbreviation Name of structure Plate/s Abbreviation Name of structure Plate/s
2n optic nerve 4 AOM anterior olfactory region, medial 1
3n oculomotor nerve 11 AOV anterior olfactory region, ventral 1
3N oculomotor nucleus 12, 13 APir amygdalopiriform transition area 8 to 11
3PC oculomotor nucleus, parvicellular part 12 APTD anterior pretectal nucleus, dorsal part 10
3V third ventricle 5 to 9 APTV anterior pretectal nucleus, ventral part 10
A11 A11 dopaminergic cells 8 Aq cerebral aqueduct 11 to 13
AA anterior amygdaloid region 6 ArcL arcuate hypothalamic nucleus, lateral part 8
AAD anterior amygdaloid region, dorsal 5 ArcLP arcuate hypothalamic nucleus, lateroposterior part 9
AAV anterior amygdaloid region, ventral 5 ArcM arcuate hypothalamic nucleus, medial part 8
ac anterior commissure 4, 5 ArcMP arcuate hypothalamic nucleus, medioposterior part 9
aca anterior commissure, anterior limb 2, 3 ASt amygdalostriatal transition zone 8
Acb nucleus accumbens 1 ATg anterior tegmental nucleus 13
AcbC nucleus accumbens, core 2, 3 Au1 primary auditory cortex 9 to 11
AcbSh nucleus accumbens, shell 2, 3 AV anterior ventral thalamic nucleus 7
acer anterior cerebral artery 3 B9 B9 serotonin cells 13
aci anterior commissure, intrabulbar 1 bic brachium of inferior colliculus 12, 13
ACo anterior cortical amygdaloid area 5 to 7 BIC nucleus of brachium of inferior colliculus 13
acp anterior commissure, posterior limb 5 BLA basolateral amygdaloid nucleus, anterior part 6 to 9
AD anterodorsal thalamic nucleus 7 BLP basolateral amygdaloid nucleus, posterior part 8 to 11
AHA anterior hypothalamic area 6, 7 BLV basolateral amygdaloid nucleus, ventral part 8, 9
AHi amygdalohippocampal transition area 9 BMA basomedial amygdaloid nucleus, anterior part 6, 7
AHiPM amygdalohippocampal trans'n area, posteromed. part 10, 11 BMP basomedial amygdaloid nucleus, posterior part 8, 9
AID agranular insula, dorsal 2 to 5 bsc brachium of superior colliculus 9, 10, 13
AIP agranular insula cortex, posterior 6 to 8 btc basal telencephalic commissure 5
AIV agranular insula, ventral 2 to 5 CA1 cornu Ammonis, area 1 4 to 11
alv alveus of hippocampus 5 to 8 CA2 cornu Ammonis, area 2 5 to 11
AM anterior medial thalamic nucleus 7 CA3 cornu Ammonis, area 3 5 to 11
AMV anterior medial thalamic nucleus, ventral part 7 CAT nucleus of the central acoustic tract 13
ANS accessory neurosecretory nucleus 7 Cd caudate 2 to 7
AOD anterior olfactory region, dorsal 1 Ce central amygdaloid nuclei 6
CeC central amygdaloid nucleus, capsular division 7 to 9
Abbreviation Name of structure Plate/s Abbreviation Name of structure Plate/s
CeL central amygdaloid nucleus, lateral division 7 to 9 EAM extended amygdala, medial part 7
CeM central amygdaloid nucleus, medial division 7, 8 ec external capsule 3 to 7
Cg cingulate cortex 1, 2 Ect ectorhinal cortex 9 to 12
Cg1 cingulate cortex, area 1 3 to 7 eml external medullary lamina 8, 9
Cg1 cingulate cortex, area 2 3 to 7 EP entopeduncular nucleus 6, 7
Cg1 choroid plexus 6 to 9 EPl external plexiform layer of main olfactory bulb 1
Cl claustrum 2 to 7 EW Edinger-Westphal nucleus 11, 12
CL centrolateral thalamic nucleus 8. 9 f fornix 4 to 10
CLi caudal linear nucleus 12, 13 F fields of Forel 9
CM central medial thalamic nuclues 6 to 9 fds fimbriodentate sulcus 4, 11, 12
cp cerebral peduncle 8 to 12 fi fimbria of hippocampus 6 to 9
csc commissure of superior colliculus 11 fr fasciculus retroflexus 8 to 10
CxA cortex-amygdala transition area 5 to 7 FrA frontal association cortex 1, 2
DA dorsal hypothalamic area 8 GCC granule cell cluster 1 to 4
dcw deep cortical white matter 2 to 12 GCCM granule cell cluster magna 3
DEn dorsal endopiriform nucleus 2 to 8 GI granular insula cortex 3 to 8
DG dentate gyrus 4 to 11 Gl glomerular layer of main olfactory bulb 1
Dk nucleus of Darkschewitsch 10 GP globus pallidus 6, 7
DLGa dorsal lateral geniculate nucleus, alpha segment 8, 9 GrA granule cell layer of accessory olfactory bulb 1
DLGb dorsal lateral geniculate nucleus, beta segment 8, 9 GrDG granule cell layer of dentate gyrus 8 to 12
DLPAG dorsolateral periaqueductal grey 10 to 13 GrO granule cell layer of main olfactory bulb 1
DMD dorsomedial hypothalamic nucleus, dorsal part 8 hbc habenular commissure 9
DMPAG dorsomedial periaqueductal grey 10 to 13 hc hippocampal commissure 5
DpG deep grey matter of superior colliculus 11 to 13 HDB nucleus of horizontal limb of diagonal band 4, 5
DpWh deep white matter of superior colliculus 11 to 13 I intercalated amygdaloid nucleus 6 to 9
DR dorsal raphe nucleus 13 IAD interanterodorsal thalamic nucleus 7
DS dorsal subiculum 8 to 12 IAM interanteromedial thalamic nucleus 7
DT dorsal terminal nucleus of optic tract 11 ic internal capsule 4 to 0
DTM dorsal tuberomammillary nucleus 9 IGL intergeniculate leaflet 8, 9
DTr dorsal transitional cortex 2 ILL intermediate nucleus of the lateral lemniscus 13
EAC extended amygdala, central part 7 IMD intermediodorsal thalamic nucleus 8
Abbreviation Name of structure Plates Abbreviation Name of structure Plates
InC interstitial nucleus of Cajal 10 to 13 LSI lateral septal nucleus, intermediate 2 to 5
InCSh interstitial nucleus of Cajal, shell part 10 to 13 LSS lateral striatal stripe 4, 5
InG intermediate grey of superior colliculus 10 to 13 LSV lateral septal nucleus, ventral 3 to 5
InWh intermediate white of superior colliculus 10 to 13 LT lateral terminal nucleus of optic tract 10, 11
IPAC interstitial nu. of the post. limb of ant. commissure 4 to 6 LV lateral ventricle 1 to 12
IPDL interpeduncular nucleus, dorsolateral part 11, 12 M motor cortex 1 to 7
IPDM interpeduncular nucleus, dorsomedial part 11, 12 MA3 medial accessory oculomotor nucleus 10, 11
IPL interpeduncular nucleus, lateral part 11, 12 MCLH magnocellular nucleus of lateral hypothalamus 8
IPV interpeduncular nucleus, ventral part 11, 12 mcp middle cerebellar peduncle 11 to 13
LA lateral anterior hypothalamic nucleus 6 MCPO magnocellular preoptic area 5, 6
La lateral amygdaloid nucleus 7 MD mediodorsal thalamic nucleus 7
LAcbSh lateral nucleus accumbens shell 3 MDC mediodorsal thalamic nucleus, central part 8
LaDL lateral amygdaloid nucleus, dorsolateral part 8, 9 MDL mediodorsal thalamic nucleus, lateral part 8
LaVL lateral amygdaloid nucleus, ventrolateral part 8, 9 MDM mediodorsal thalamic nucleus, medial part 8
LaVM lateral amygdaloid nucleus, ventromedial part 8 ME median eminence 8
LEnt lateral entorhinal cortex 9 to 13 me5 mesencephalic trigeminal tract 11 to 13
lfp longitudinal fibres of the pons 12 Me5 mesencephalic trigeminal nucleus 11, 12
LH lateral hypothalamic area 6 MeA medial amygdaloid nucleus, anterior part 6, 7
LHb lateral habenular nucleus 8 MEI median eminence, internal layer 9
ll lateral lemniscus 13 MEnt medial entorhinal cortex 12, 13
LM lateral mammillary nucleus 10 MEnt medial entorhinal cortex 13
LO lateral orbital cortex 1 MePD medial amygdaloid nucleus, posterodorsal part 8
lo lateral olfactory tract 1 to 6 MePV medial amygdaloid nucleus, posteroventral part 8
LOT1 nucleus of lateral olfactory tract, layer 1 6 mfb medial forebrain bundle 4 to 7
LOT2 nucleus of lateral olfactory tract, layer 2 6 MGD medial geniculate nucleus, dorsal part 10 to 12
LOT3 nucleus of lateral olfactory tract, layer 3 6 MGM medial geniculate nucleus, medial part 10 to 12
LPAG lateral periaqueductal grey 10 to 13 MGV medial geniculate nucleus, ventral part 10 to 12
LPLR lateral posterior thalamic nucleus, laterorostral part 8, 9 MHb medial habenular nucleus 7, 8
LPMR lateral posterior thalamic nucleus, mediorostral part 8, 9 Mi mitral cell layer of main olfactory bulb 1
LPO lateral preoptic area 4, 5 MiTg microcellular tegmental nucleus 13
LSD lateral septal nucleus, dorsal 3 to 5 ml medial lemniscus 8 to 13
Abbreviation Name of structure Plates Abbreviation Name of structure Plates
ML medial mammillary nucleus, lateral part 10 PaS parasubiculum of hippocampal formation 13
mlf medial longitudinal fasciculus 11 to 13 PBG parabigeminal nucleus 13
MM medial mammillary nucleus, medial part 10 PBP parabrachial pigmented nucleus 10 to 12
MnPO median preoptic area 4 PC paracentral thalamic nucleus 7
MnR median raphe nucleus 13 pc posterior commissure 10
MO medial orbital cortex 1 PCom nucleus of the posterior commissure 10
MoDG molecular layer of dentate gyrus 8 to 12 Pe periventricular nucleus of hypothalamus 6 to 8
mp mammillary peduncle 10 PeFLH perifornical part of lateral hypothalamus 8
MPA medial preoptic area 4, 6 PF parafascicular thalamic nucleus 9
MPOL medial preoptic area, lateral part 5 PH posterior hypothalamic nucleus 9
MPOM medial preoptic area, medial part 5 PIL posterior intralaminar thalamic nucleus 10 to 12
mRt mesencephalic reticular formation 11 to 13 Pir1 piriform (olfactory) cortex, layer 1 1, 9, 10
MS medial septal nucleus 3 Pir1a piriform (olfactory) cortex, layer 1a 2 to 8
mt mammillothalamic tract 6 to 9 Pir1b piriform (olfactory) cortex, layer 1b 2 to 8
MT medial terminal nucleus of optic tract 10 Pir2 piriform (olfactory) cortex, layer 2 1 to 10
mt mammillothalamic tract 10 Pir3 piriform (olfactory) cortex, layer 3 1 to 10
MTu medial tuberal nucleus 8, 9 PLCo posterolateral cortical amygdaloid area 8 to 11
MZMG medial geniculate nucleus, marginal zone 11, 12 PLH peduncular part of lateral hypothalamus 7 to 9
ns nigrostriatal pathway 8 PlPAG plioglial periaqueductal grey 11
Nv navicular nucleus 2 PLV perilemniscal nucleus, ventral part 13
och optic chiasm 5, 6 PMCo posteromedial cortical amygdaloid area 8 to 11
Om omega nucleus 12 PMD premammillary nucleus, dorsal part 9
Op stratum opticum of superior colliculus 10 to 13 PMnR paramedian raphe nucleus 13
OPC oval paracentral thalamic nucleus 8 PMV premammillary nucleus, ventral part 9
opt optic tract 7 to 9 Pn pontine nuclei 11, 12
OPT olivary pretectal nucleus 10 PnO pontine oral reticular nucleus 13
OT nucleus of the optic tract 10, 11 Po posterior thalamic nuclear group 8, 9
p1PAG prosomere 1 periaqueductal grey 10 PoDG polymorphic layer of dentate gyrus 8 to 11
p1Rt prosomere 1 reticular formation 10 PoMn posteromedian thalamic nucleus 9
Pa paraventricular nucleus of hypothalamus 6, 7 PoT posterior thalamic nuclear group, triangular part 10 to 12
PaR pararubral nucleus 11, 12 PP peripeduncular nucleus 11
Abbreviation Name of structure Plates Abbreviation Name of structure Plates
PPT posterior pretectal nucleus 10 RSG retrosplenial cortex, granular part 12, 13
PR prerubral field 10 RSGa retrosplenial cortex, granular part a 8 to 11
PrC precommissural nucleus 9 RSGb retrosplenial cortex, granular part b 8 to 11
PrCnF precuneiform area 13 Rt reticular nucleus (prethalamus) 7, 8
PrGMC pregeniculate nu. of prethalamus, magnocellular part 8, 9 RtSt reticulostrial nucleus 7
PrGPC pregeniculate nu. of prethalamus, parvicellular part 8, 9 RtTg reticulotegmental nucleus 12
PRh perirhinal cortex 9 to 13 S subiculum of hippocampal formation 4 to 7
PrL prelimbic cortex 1, 2 S1 primary somatosensory cortex 3, 4, 8
PrS presubiculum of hippocampal formation 12, 13 S1FL primary somatosensory cortex, forelimb area 5, 6
PSTh parasubthalamic nucleus 9 S1HL primary somatosensory cortex, hindlimb area 5 to 7
PT parataenial thalamic nucleus 6, 7 S1My primary somatosensory cx, mystacial (whisker) area 5 to 7
Pu putamen 4 to 8 S2 secondary somatosensory cortex 4 to 8
PVA paraventricular thalamic nucleus, anterior part 6, 7 SC superior colliculus 11
PVP paraventricular thalamic nucleus, posterior part 9 SCh suprachiasmatic nucleus of hypothalamus 6
py pyramidal tract 13 SCO subcommissural organ 10
Rbd rhabdoid nucleus 13 scp superior cerebellar peduncle 8 to 13
RChL retrochiasmatic area, lateral part 7 SFi septofimbrial nucleus 4
RChM retrochiasmatic area, medial part 7 SFi septofimbrial nucleus 5
Re reuniens thalamic nucleus 7, 8 SFO subfornical organ 4
REth retroethmoid nucleus 10 SG suprageniculate thalamic nucleus 11, 12
rf rhinal fissure 1 to 13 SHi septohippocampal area 3, 4
Rh rhomboid thalamic nucleus 7, 8 SHy septohypothalamic nucleus 4, 5
ri rhinal incisure 1 SIB substantia innominata, basal part 4, 5, 6
RIs retroisthmic nucleus 13 sm stria medullaris thalami 6, 7, 9
RLi rostral linear nucleus of midbrain 10, 11 SNC substantia nigra, compact part 10, 12
RMC red nucleus, magnocellular part 11, 12 SNCD substantia nigra, compact part, dorsal tier 11
RML retromammillary nucleus, lateral part 10 SNCM substantia nigra, compact part, medial tier 11
RMM retromammillary nucleus, medial part 10 SNL substantia nigra, lateral part 11, 12
RPC red nucleus, parvicellular part 11, 12 SNR substantia nigra, reticular part 10 to 12
RRF retrorubral fields 12, 13 SOA supraoptic nucleus of hypothalamus, anterior part 6
RSD retrosplenial cortex, dysgranular part 8 to 12 SOR supraoptic nu. of hypothalamus, retrochiasmatic part 7
Abbreviation Name of structure Plates Abbreviation Name of structure Plates
sox supraoptic decussation 7, 8 V2L secondary visual cortex, lateral region 8 to 13
SPa subparaventricular nucleus of hypothalamus 6 V2M secondary visual cortex, medial region 8 to 12
SPF subparafascicular nucleus 9 VA ventral anterior thalamic nucleus 7
SPFPC subparafascicular nucleus, parvicellular part 10 VDB nucleus of vertical limb of diagonal band 3
st stria terminalis 4 to 9 VEn ventral endopiriform nucleus 2 to 6
STh subthalamic nucleus 8, 9 VL ventral lateral thalamic nucleus 8
StHy striohypothalamic area 5, 6 VLH ventrolateral hypothalamic nucleus 7
STIA bed nucleus of stria terminalis, intraamygdaloidal 8 VLL ventral nucleus of the lateral lemniscus 13
STLD bed nu. of stria terminalis, lateral division, dorsal part 4, 5 VLPAG ventrolateral periaqueductal grey 12, 13
STLJ bed nu. of stria terminalis, lateral div'n, juxtacapsular 5 VLPO ventrolateral preoptic nucleus 5
STLV bed nu. of stria terminalis, lateral division, ventral 4, 5 VM ventromedial thalamic nucleus 7, 8
STMD bed nu. of stria terminalis, medial division, dorsal part 5 VMHC ventromedial hypothalamic nucleus, central part 8
STMPL bed nu. of stria terminalis, medial div'n, posterolat. 6 VMHDM ventromedial hypothalamic nu., dorsomedial part 8
STMPM bed nu. of stria terminalis, medial div'n, posteromed 6 VMHVL ventromedial hypothalamic nu., ventrolateral part 8
STMV bed nu. of stria terminalis, medial division, ventral 4, 5 VMPO ventromedial preoptic nucleus 4, 5
str superior thalamic radiation 9 VMZ ventral marginal zone of hypothalamus 8
Su3 supraoculomotor nucleus 11 to 13 VO ventral orbital cortex 1
Su3C supraoculomotor cap 11 to 13 VP ventral pallidum 1 to 5
SubB subbrachial nucleus 13 VPL ventral posterolateral thalamic nucleus 8, 9
SubG subgeniculate nucleus 9 VPM ventral posteromedial thalamic nucleus 8, 9
SubI subincertal nucleus 8 VPPC ventral posterior thalamic nucleus, parvicellular part 9
SuG superficial grey of superior colliculus 10 to 13 VRe ventral reuniens thalamic nucleus 7, 8
TeA temporal association cortex 9 to 12 VS ventral subiculum 10 to 12
TS triangular septal nucleus 5 Xi xiphoid thalamic nucleus 7, 8
ts tectospinal tract 12, 13 xscp decussation of the superior cerebellar peduncle 13
TT taenia tecta 2, 3 ZID zona incerta, dorsal part 8, 9
Tu olfactory tubercle 1 to 5 ZIV zona incerta, ventral part 8, 9
TuLH tuberal region of lateral hypothalamus 8 Zo stratum zonale of superior colliculus 10 to 13
Tz nucleus of the trapezoid body 13
tz trapezoid body 13
V1 primary visual cortex 8 to 13

 

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Tasmanian devil